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/data/users/matthijs/github_faiss/faiss/VectorTransform.cpp
1 /**
2 * Copyright (c) 2015-present, Facebook, Inc.
3 * All rights reserved.
4 *
5 * This source code is licensed under the BSD+Patents license found in the
6 * LICENSE file in the root directory of this source tree.
7 */
8
9 // Copyright 2004-present Facebook. All Rights Reserved
10 // -*- c++ -*-
11
12 #include "VectorTransform.h"
13
14 #include <cstdio>
15 #include <cmath>
16 #include <cstring>
17
18 #include "utils.h"
19 #include "FaissAssert.h"
20 #include "IndexPQ.h"
21
22 using namespace faiss;
23
24
25 extern "C" {
26
27 // this is to keep the clang syntax checker happy
28 #ifndef FINTEGER
29 #define FINTEGER int
30 #endif
31
32
33 /* declare BLAS functions, see http://www.netlib.org/clapack/cblas/ */
34
35 int sgemm_ (
36 const char *transa, const char *transb, FINTEGER *m, FINTEGER *
37 n, FINTEGER *k, const float *alpha, const float *a,
38 FINTEGER *lda, const float *b,
39 FINTEGER *ldb, float *beta,
40 float *c, FINTEGER *ldc);
41
42 int ssyrk_ (
43 const char *uplo, const char *trans, FINTEGER *n, FINTEGER *k,
44 float *alpha, float *a, FINTEGER *lda,
45 float *beta, float *c, FINTEGER *ldc);
46
47 /* Lapack functions from http://www.netlib.org/clapack/old/single/ */
48
49 int ssyev_ (
50 const char *jobz, const char *uplo, FINTEGER *n, float *a,
51 FINTEGER *lda, float *w, float *work, FINTEGER *lwork,
52 FINTEGER *info);
53
54 int dsyev_ (
55 const char *jobz, const char *uplo, FINTEGER *n, double *a,
56 FINTEGER *lda, double *w, double *work, FINTEGER *lwork,
57 FINTEGER *info);
58
59 int sgesvd_(
60 const char *jobu, const char *jobvt, FINTEGER *m, FINTEGER *n,
61 float *a, FINTEGER *lda, float *s, float *u, FINTEGER *ldu, float *vt,
62 FINTEGER *ldvt, float *work, FINTEGER *lwork, FINTEGER *info);
63
64 }
65
66 /*********************************************
67 * VectorTransform
68 *********************************************/
69
70
71
72 float * VectorTransform::apply (Index::idx_t n, const float * x) const
73 {
74 float * xt = new float[n * d_out];
75 apply_noalloc (n, x, xt);
76 return xt;
77 }
78
79
80 void VectorTransform::train (idx_t, const float *) {
81 // does nothing by default
82 }
83
84
85 void VectorTransform::reverse_transform (
86 idx_t , const float *,
87 float *) const
88 {
89 FAISS_THROW_MSG ("reverse transform not implemented");
90 }
91
92
93
94
95 /*********************************************
96 * LinearTransform
97 *********************************************/
98 /// both d_in > d_out and d_out < d_in are supported
99 LinearTransform::LinearTransform (int d_in, int d_out,
100 bool have_bias):
101 VectorTransform (d_in, d_out), have_bias (have_bias),
102 verbose (false)
103 {}
104
105 void LinearTransform::apply_noalloc (Index::idx_t n, const float * x,
106 float * xt) const
107 {
108 FAISS_THROW_IF_NOT_MSG(is_trained, "Transformation not trained yet");
109
110 float c_factor;
111 if (have_bias) {
112 FAISS_THROW_IF_NOT_MSG (b.size() == d_out, "Bias not initialized");
113 float * xi = xt;
114 for (int i = 0; i < n; i++)
115 for(int j = 0; j < d_out; j++)
116 *xi++ = b[j];
117 c_factor = 1.0;
118 } else {
119 c_factor = 0.0;
120 }
121
122 FAISS_THROW_IF_NOT_MSG (A.size() == d_out * d_in,
123 "Transformation matrix not initialized");
124
125 float one = 1;
126 FINTEGER nbiti = d_out, ni = n, di = d_in;
127 sgemm_ ("Transposed", "Not transposed",
128 &nbiti, &ni, &di,
129 &one, A.data(), &di, x, &di, &c_factor, xt, &nbiti);
130
131 }
132
133
134 void LinearTransform::transform_transpose (idx_t n, const float * y,
135 float *x) const
136 {
137 if (have_bias) { // allocate buffer to store bias-corrected data
138 float *y_new = new float [n * d_out];
139 const float *yr = y;
140 float *yw = y_new;
141 for (idx_t i = 0; i < n; i++) {
142 for (int j = 0; j < d_out; j++) {
143 *yw++ = *yr++ - b [j];
144 }
145 }
146 y = y_new;
147 }
148
149 {
150 FINTEGER dii = d_in, doi = d_out, ni = n;
151 float one = 1.0, zero = 0.0;
152 sgemm_ ("Not", "Not", &dii, &ni, &doi,
153 &one, A.data (), &dii, y, &doi, &zero, x, &dii);
154 }
155
156 if (have_bias) delete [] y;
157 }
158
159
160 /*********************************************
161 * RandomRotationMatrix
162 *********************************************/
163
164 void RandomRotationMatrix::init (int seed)
165 {
166
167 if(d_out <= d_in) {
168 A.resize (d_out * d_in);
169 float *q = A.data();
170 float_randn(q, d_out * d_in, seed);
171 matrix_qr(d_in, d_out, q);
172 } else {
173 A.resize (d_out * d_out);
174 float *q = A.data();
175 float_randn(q, d_out * d_out, seed);
176 matrix_qr(d_out, d_out, q);
177 // remove columns
178 int i, j;
179 for (i = 0; i < d_out; i++) {
180 for(j = 0; j < d_in; j++) {
181 q[i * d_in + j] = q[i * d_out + j];
182 }
183 }
184 A.resize(d_in * d_out);
185 }
186
187 }
188
189 void RandomRotationMatrix::reverse_transform (idx_t n, const float * xt,
190 float *x) const
191 {
192 transform_transpose (n, xt, x);
193 }
194
195 /*********************************************
196 * PCAMatrix
197 *********************************************/
198
199 PCAMatrix::PCAMatrix (int d_in, int d_out,
200 float eigen_power, bool random_rotation):
201 LinearTransform(d_in, d_out, true),
202 eigen_power(eigen_power), random_rotation(random_rotation)
203 {
204 is_trained = false;
205 max_points_per_d = 1000;
206 balanced_bins = 0;
207 }
208
209
210 namespace {
211
212 /// Compute the eigenvalue decomposition of symmetric matrix cov,
213 /// dimensions d_in-by-d_in. Output eigenvectors in cov.
214
215 void eig(size_t d_in, double *cov, double *eigenvalues, int verbose)
216 {
217 { // compute eigenvalues and vectors
218 FINTEGER info = 0, lwork = -1, di = d_in;
219 double workq;
220
221 dsyev_ ("Vectors as well", "Upper",
222 &di, cov, &di, eigenvalues, &workq, &lwork, &info);
223 lwork = FINTEGER(workq);
224 double *work = new double[lwork];
225
226 dsyev_ ("Vectors as well", "Upper",
227 &di, cov, &di, eigenvalues, work, &lwork, &info);
228
229 delete [] work;
230
231 if (info != 0) {
232 fprintf (stderr, "WARN ssyev info returns %d, "
233 "a very bad PCA matrix is learnt\n",
234 int(info));
235 // do not throw exception, as the matrix could still be useful
236 }
237
238
239 if(verbose && d_in <= 10) {
240 printf("info=%ld new eigvals=[", long(info));
241 for(int j = 0; j < d_in; j++) printf("%g ", eigenvalues[j]);
242 printf("]\n");
243
244 double *ci = cov;
245 printf("eigenvecs=\n");
246 for(int i = 0; i < d_in; i++) {
247 for(int j = 0; j < d_in; j++)
248 printf("%10.4g ", *ci++);
249 printf("\n");
250 }
251 }
252
253 }
254
255 // revert order of eigenvectors & values
256
257 for(int i = 0; i < d_in / 2; i++) {
258
259 std::swap(eigenvalues[i], eigenvalues[d_in - 1 - i]);
260 double *v1 = cov + i * d_in;
261 double *v2 = cov + (d_in - 1 - i) * d_in;
262 for(int j = 0; j < d_in; j++)
263 std::swap(v1[j], v2[j]);
264 }
265
266 }
267
268
269 }
270
271 void PCAMatrix::train (Index::idx_t n, const float *x)
272 {
273 const float * x_in = x;
274
275 x = fvecs_maybe_subsample (d_in, (size_t*)&n,
276 max_points_per_d * d_in, x, verbose);
277
278 ScopeDeleter<float> del_x (x != x_in ? x : nullptr);
279
280 // compute mean
281 mean.clear(); mean.resize(d_in, 0.0);
282 if (have_bias) { // we may want to skip the bias
283 const float *xi = x;
284 for (int i = 0; i < n; i++) {
285 for(int j = 0; j < d_in; j++)
286 mean[j] += *xi++;
287 }
288 for(int j = 0; j < d_in; j++)
289 mean[j] /= n;
290 }
291 if(verbose) {
292 printf("mean=[");
293 for(int j = 0; j < d_in; j++) printf("%g ", mean[j]);
294 printf("]\n");
295 }
296
297 if(n >= d_in) {
298 // compute covariance matrix, store it in PCA matrix
299 PCAMat.resize(d_in * d_in);
300 float * cov = PCAMat.data();
301 { // initialize with mean * mean^T term
302 float *ci = cov;
303 for(int i = 0; i < d_in; i++) {
304 for(int j = 0; j < d_in; j++)
305 *ci++ = - n * mean[i] * mean[j];
306 }
307 }
308 {
309 FINTEGER di = d_in, ni = n;
310 float one = 1.0;
311 ssyrk_ ("Up", "Non transposed",
312 &di, &ni, &one, (float*)x, &di, &one, cov, &di);
313
314 }
315 if(verbose && d_in <= 10) {
316 float *ci = cov;
317 printf("cov=\n");
318 for(int i = 0; i < d_in; i++) {
319 for(int j = 0; j < d_in; j++)
320 printf("%10g ", *ci++);
321 printf("\n");
322 }
323 }
324
325 std::vector<double> covd (d_in * d_in);
326 for (size_t i = 0; i < d_in * d_in; i++) covd [i] = cov [i];
327
328 std::vector<double> eigenvaluesd (d_in);
329
330 eig (d_in, covd.data (), eigenvaluesd.data (), verbose);
331
332 for (size_t i = 0; i < d_in * d_in; i++) PCAMat [i] = covd [i];
333 eigenvalues.resize (d_in);
334
335 for (size_t i = 0; i < d_in; i++)
336 eigenvalues [i] = eigenvaluesd [i];
337
338
339 } else {
340
341 std::vector<float> xc (n * d_in);
342
343 for (size_t i = 0; i < n; i++)
344 for(size_t j = 0; j < d_in; j++)
345 xc [i * d_in + j] = x [i * d_in + j] - mean[j];
346
347 // compute Gram matrix
348 std::vector<float> gram (n * n);
349 {
350 FINTEGER di = d_in, ni = n;
351 float one = 1.0, zero = 0.0;
352 ssyrk_ ("Up", "Transposed",
353 &ni, &di, &one, xc.data(), &di, &zero, gram.data(), &ni);
354 }
355
356 if(verbose && d_in <= 10) {
357 float *ci = gram.data();
358 printf("gram=\n");
359 for(int i = 0; i < n; i++) {
360 for(int j = 0; j < n; j++)
361 printf("%10g ", *ci++);
362 printf("\n");
363 }
364 }
365
366 std::vector<double> gramd (n * n);
367 for (size_t i = 0; i < n * n; i++)
368 gramd [i] = gram [i];
369
370 std::vector<double> eigenvaluesd (n);
371
372 // eig will fill in only the n first eigenvals
373
374 eig (n, gramd.data (), eigenvaluesd.data (), verbose);
375
376 PCAMat.resize(d_in * n);
377
378 for (size_t i = 0; i < n * n; i++)
379 gram [i] = gramd [i];
380
381 eigenvalues.resize (d_in);
382 // fill in only the n first ones
383 for (size_t i = 0; i < n; i++)
384 eigenvalues [i] = eigenvaluesd [i];
385
386 { // compute PCAMat = x' * v
387 FINTEGER di = d_in, ni = n;
388 float one = 1.0;
389
390 sgemm_ ("Non", "Non Trans",
391 &di, &ni, &ni,
392 &one, xc.data(), &di, gram.data(), &ni,
393 &one, PCAMat.data(), &di);
394 }
395
396 if(verbose && d_in <= 10) {
397 float *ci = PCAMat.data();
398 printf("PCAMat=\n");
399 for(int i = 0; i < n; i++) {
400 for(int j = 0; j < d_in; j++)
401 printf("%10g ", *ci++);
402 printf("\n");
403 }
404 }
405 fvec_renorm_L2 (d_in, n, PCAMat.data());
406
407 }
408
409 prepare_Ab();
410 is_trained = true;
411 }
412
413 void PCAMatrix::copy_from (const PCAMatrix & other)
414 {
415 FAISS_THROW_IF_NOT (other.is_trained);
416 mean = other.mean;
417 eigenvalues = other.eigenvalues;
418 PCAMat = other.PCAMat;
419 prepare_Ab ();
420 is_trained = true;
421 }
422
423 void PCAMatrix::prepare_Ab ()
424 {
425
426 if (!random_rotation) {
427 FAISS_THROW_IF_NOT_MSG (
428 d_out * d_in <= PCAMat.size(),
429 "PCA matrix was trained on too few examples "
430 "to output this number of dimensions");
431 A = PCAMat;
432 A.resize(d_out * d_in); // strip off useless dimensions
433
434 // first scale the components
435 if (eigen_power != 0) {
436 float *ai = A.data();
437 for (int i = 0; i < d_out; i++) {
438 float factor = pow(eigenvalues[i], eigen_power);
439 for(int j = 0; j < d_in; j++)
440 *ai++ *= factor;
441 }
442 }
443
444 if (balanced_bins != 0) {
445 FAISS_THROW_IF_NOT (d_out % balanced_bins == 0);
446 int dsub = d_out / balanced_bins;
447 std::vector <float> Ain;
448 std::swap(A, Ain);
449 A.resize(d_out * d_in);
450
451 std::vector <float> accu(balanced_bins);
452 std::vector <int> counter(balanced_bins);
453
454 // greedy assignment
455 for (int i = 0; i < d_out; i++) {
456 // find best bin
457 int best_j = -1;
458 float min_w = 1e30;
459 for (int j = 0; j < balanced_bins; j++) {
460 if (counter[j] < dsub && accu[j] < min_w) {
461 min_w = accu[j];
462 best_j = j;
463 }
464 }
465 int row_dst = best_j * dsub + counter[best_j];
466 accu[best_j] += eigenvalues[i];
467 counter[best_j] ++;
468 memcpy (&A[row_dst * d_in], &Ain[i * d_in],
469 d_in * sizeof (A[0]));
470 }
471
472 if (verbose) {
473 printf(" bin accu=[");
474 for (int i = 0; i < balanced_bins; i++)
475 printf("%g ", accu[i]);
476 printf("]\n");
477 }
478 }
479
480
481 } else {
482 FAISS_THROW_IF_NOT_MSG (balanced_bins == 0,
483 "both balancing bins and applying a random rotation "
484 "does not make sense");
485 RandomRotationMatrix rr(d_out, d_out);
486
487 rr.init(5);
488
489 // apply scaling on the rotation matrix (right multiplication)
490 if (eigen_power != 0) {
491 for (int i = 0; i < d_out; i++) {
492 float factor = pow(eigenvalues[i], eigen_power);
493 for(int j = 0; j < d_out; j++)
494 rr.A[j * d_out + i] *= factor;
495 }
496 }
497
498 A.resize(d_in * d_out);
499 {
500 FINTEGER dii = d_in, doo = d_out;
501 float one = 1.0, zero = 0.0;
502
503 sgemm_ ("Not", "Not", &dii, &doo, &doo,
504 &one, PCAMat.data(), &dii, rr.A.data(), &doo, &zero,
505 A.data(), &dii);
506
507 }
508
509 }
510
511 b.clear(); b.resize(d_out);
512
513 for (int i = 0; i < d_out; i++) {
514 float accu = 0;
515 for (int j = 0; j < d_in; j++)
516 accu -= mean[j] * A[j + i * d_in];
517 b[i] = accu;
518 }
519
520 }
521
522 void PCAMatrix::reverse_transform (idx_t n, const float * xt,
523 float *x) const
524 {
525 FAISS_THROW_IF_NOT_MSG (eigen_power == 0,
526 "reverse only implemented for orthogonal transforms");
527 transform_transpose (n, xt, x);
528 }
529
530 /*********************************************
531 * OPQMatrix
532 *********************************************/
533
534
535 OPQMatrix::OPQMatrix (int d, int M, int d2):
536 LinearTransform (d, d2 == -1 ? d : d2, false), M(M),
537 niter (50),
538 niter_pq (4), niter_pq_0 (40),
539 verbose(false)
540 {
541 is_trained = false;
542 // OPQ is quite expensive to train, so set this right.
543 max_train_points = 256 * 256;
544 }
545
546
547
548 void OPQMatrix::train (Index::idx_t n, const float *x)
549 {
550
551 const float * x_in = x;
552
553 x = fvecs_maybe_subsample (d_in, (size_t*)&n,
554 max_train_points, x, verbose);
555
556 ScopeDeleter<float> del_x (x != x_in ? x : nullptr);
557
558 // To support d_out > d_in, we pad input vectors with 0s to d_out
559 size_t d = d_out <= d_in ? d_in : d_out;
560 size_t d2 = d_out;
561
562 #if 0
563 // what this test shows: the only way of getting bit-exact
564 // reproducible results with sgeqrf and sgesvd seems to be forcing
565 // single-threading.
566 { // test repro
567 std::vector<float> r (d * d);
568 float * rotation = r.data();
569 float_randn (rotation, d * d, 1234);
570 printf("CS0: %016lx\n",
571 ivec_checksum (128*128, (int*)rotation));
572 matrix_qr (d, d, rotation);
573 printf("CS1: %016lx\n",
574 ivec_checksum (128*128, (int*)rotation));
575 return;
576 }
577 #endif
578
579 if (verbose) {
580 printf ("OPQMatrix::train: training an OPQ rotation matrix "
581 "for M=%d from %ld vectors in %dD -> %dD\n",
582 M, n, d_in, d_out);
583 }
584
585 std::vector<float> xtrain (n * d);
586 // center x
587 {
588 std::vector<float> sum (d);
589 const float *xi = x;
590 for (size_t i = 0; i < n; i++) {
591 for (int j = 0; j < d_in; j++)
592 sum [j] += *xi++;
593 }
594 for (int i = 0; i < d; i++) sum[i] /= n;
595 float *yi = xtrain.data();
596 xi = x;
597 for (size_t i = 0; i < n; i++) {
598 for (int j = 0; j < d_in; j++)
599 *yi++ = *xi++ - sum[j];
600 yi += d - d_in;
601 }
602 }
603 float *rotation;
604
605 if (A.size () == 0) {
606 A.resize (d * d);
607 rotation = A.data();
608 if (verbose)
609 printf(" OPQMatrix::train: making random %ld*%ld rotation\n",
610 d, d);
611 float_randn (rotation, d * d, 1234);
612 matrix_qr (d, d, rotation);
613 // we use only the d * d2 upper part of the matrix
614 A.resize (d * d2);
615 } else {
616 FAISS_THROW_IF_NOT (A.size() == d * d2);
617 rotation = A.data();
618 }
619
620
621 std::vector<float>
622 xproj (d2 * n), pq_recons (d2 * n), xxr (d * n),
623 tmp(d * d * 4);
624
625 std::vector<uint8_t> codes (M * n);
626 ProductQuantizer pq_regular (d2, M, 8);
627 double t0 = getmillisecs();
628 for (int iter = 0; iter < niter; iter++) {
629
630 { // torch.mm(xtrain, rotation:t())
631 FINTEGER di = d, d2i = d2, ni = n;
632 float zero = 0, one = 1;
633 sgemm_ ("Transposed", "Not transposed",
634 &d2i, &ni, &di,
635 &one, rotation, &di,
636 xtrain.data(), &di,
637 &zero, xproj.data(), &d2i);
638 }
639
640 pq_regular.cp.max_points_per_centroid = 1000;
641 pq_regular.cp.niter = iter == 0 ? niter_pq_0 : niter_pq;
642 pq_regular.cp.verbose = verbose;
643 pq_regular.train (n, xproj.data());
644
645 pq_regular.compute_codes (xproj.data(), codes.data(), n);
646 pq_regular.decode (codes.data(), pq_recons.data(), n);
647
648 float pq_err = fvec_L2sqr (pq_recons.data(), xproj.data(), n * d2) / n;
649
650 if (verbose)
651 printf (" Iteration %d (%d PQ iterations):"
652 "%.3f s, obj=%g\n", iter, pq_regular.cp.niter,
653 (getmillisecs () - t0) / 1000.0, pq_err);
654
655 {
656 float *u = tmp.data(), *vt = &tmp [d * d];
657 float *sing_val = &tmp [2 * d * d];
658 FINTEGER di = d, d2i = d2, ni = n;
659 float one = 1, zero = 0;
660
661 // torch.mm(xtrain:t(), pq_recons)
662 sgemm_ ("Not", "Transposed",
663 &d2i, &di, &ni,
664 &one, pq_recons.data(), &d2i,
665 xtrain.data(), &di,
666 &zero, xxr.data(), &d2i);
667
668
669 FINTEGER lwork = -1, info = -1;
670 float worksz;
671 // workspace query
672 sgesvd_ ("All", "All",
673 &d2i, &di, xxr.data(), &d2i,
674 sing_val,
675 vt, &d2i, u, &di,
676 &worksz, &lwork, &info);
677
678 lwork = int(worksz);
679 std::vector<float> work (lwork);
680 // u and vt swapped
681 sgesvd_ ("All", "All",
682 &d2i, &di, xxr.data(), &d2i,
683 sing_val,
684 vt, &d2i, u, &di,
685 work.data(), &lwork, &info);
686
687 sgemm_ ("Transposed", "Transposed",
688 &di, &d2i, &d2i,
689 &one, u, &di, vt, &d2i,
690 &zero, rotation, &di);
691
692 }
693 pq_regular.train_type = ProductQuantizer::Train_hot_start;
694 }
695
696 // revert A matrix
697 if (d > d_in) {
698 for (long i = 0; i < d_out; i++)
699 memmove (&A[i * d_in], &A[i * d], sizeof(A[0]) * d_in);
700 A.resize (d_in * d_out);
701 }
702
703 is_trained = true;
704 }
705
706
707
708
709 void OPQMatrix::reverse_transform (idx_t n, const float * xt,
710 float *x) const
711 {
712 transform_transpose (n, xt, x);
713 }
714
715
716 /*********************************************
717 * NormalizationTransform
718 *********************************************/
719
720 NormalizationTransform::NormalizationTransform (int d, float norm):
721 VectorTransform (d, d), norm (norm)
722 {
723 }
724
725 NormalizationTransform::NormalizationTransform ():
726 VectorTransform (-1, -1), norm (-1)
727 {
728 }
729
730 void NormalizationTransform::apply_noalloc
731 (idx_t n, const float* x, float* xt) const
732 {
733 if (norm == 2.0) {
734 memcpy (xt, x, sizeof (x[0]) * n * d_in);
735 fvec_renorm_L2 (d_in, n, xt);
736 } else {
737 FAISS_THROW_MSG ("not implemented");
738 }
739 }
740
741 /*********************************************
742 * IndexPreTransform
743 *********************************************/
744
745 IndexPreTransform::IndexPreTransform ():
746 index(nullptr), own_fields (false)
747 {
748 }
749
750
751 IndexPreTransform::IndexPreTransform (
752 Index * index):
753 Index (index->d, index->metric_type),
754 index (index), own_fields (false)
755 {
756 is_trained = index->is_trained;
757 }
758
759
760 IndexPreTransform::IndexPreTransform (
761 VectorTransform * ltrans,
762 Index * index):
763 Index (index->d, index->metric_type),
764 index (index), own_fields (false)
765 {
766 is_trained = index->is_trained;
767 prepend_transform (ltrans);
768 }
769
770 void IndexPreTransform::prepend_transform (VectorTransform *ltrans)
771 {
772 FAISS_THROW_IF_NOT (ltrans->d_out == d);
773 is_trained = is_trained && ltrans->is_trained;
774 chain.insert (chain.begin(), ltrans);
775 d = ltrans->d_in;
776 }
777
778
779 IndexPreTransform::~IndexPreTransform ()
780 {
781 if (own_fields) {
782 for (int i = 0; i < chain.size(); i++)
783 delete chain[i];
784 delete index;
785 }
786 }
787
788
789
790
791 void IndexPreTransform::train (idx_t n, const float *x)
792 {
793 int last_untrained = 0;
794 if (!index->is_trained) {
795 last_untrained = chain.size();
796 } else {
797 for (int i = chain.size() - 1; i >= 0; i--) {
798 if (!chain[i]->is_trained) {
799 last_untrained = i;
800 break;
801 }
802 }
803 }
804 const float *prev_x = x;
805 ScopeDeleter<float> del;
806
807 for (int i = 0; i <= last_untrained; i++) {
808 if (i < chain.size()) {
809 VectorTransform *ltrans = chain [i];
810 if (!ltrans->is_trained)
811 ltrans->train(n, prev_x);
812 } else {
813 index->train (n, prev_x);
814 }
815 if (i == last_untrained) break;
816
817 float * xt = chain[i]->apply (n, prev_x);
818 if (prev_x != x) delete prev_x;
819 prev_x = xt;
820 del.set(xt);
821 }
822
823 is_trained = true;
824 }
825
826
827 const float *IndexPreTransform::apply_chain (idx_t n, const float *x) const
828 {
829 const float *prev_x = x;
830 ScopeDeleter<float> del;
831
832 for (int i = 0; i < chain.size(); i++) {
833 float * xt = chain[i]->apply (n, prev_x);
834 ScopeDeleter<float> del2 (xt);
835 del2.swap (del);
836 prev_x = xt;
837 }
838 del.release ();
839 return prev_x;
840 }
841
842 void IndexPreTransform::add (idx_t n, const float *x)
843 {
844 FAISS_THROW_IF_NOT (is_trained);
845 const float *xt = apply_chain (n, x);
846 ScopeDeleter<float> del(xt == x ? nullptr : xt);
847 index->add (n, xt);
848 ntotal = index->ntotal;
849 }
850
851 void IndexPreTransform::add_with_ids (idx_t n, const float * x,
852 const long *xids)
853 {
854 FAISS_THROW_IF_NOT (is_trained);
855 const float *xt = apply_chain (n, x);
856 ScopeDeleter<float> del(xt == x ? nullptr : xt);
857 index->add_with_ids (n, xt, xids);
858 ntotal = index->ntotal;
859 }
860
861
862
863
864 void IndexPreTransform::search (idx_t n, const float *x, idx_t k,
865 float *distances, idx_t *labels) const
866 {
867 FAISS_THROW_IF_NOT (is_trained);
868 const float *xt = apply_chain (n, x);
869 ScopeDeleter<float> del(xt == x ? nullptr : xt);
870 index->search (n, xt, k, distances, labels);
871 }
872
873
874 void IndexPreTransform::reset () {
875 index->reset();
876 ntotal = 0;
877 }
878
879 long IndexPreTransform::remove_ids (const IDSelector & sel) {
880 long nremove = index->remove_ids (sel);
881 ntotal = index->ntotal;
882 return nremove;
883 }
884
885
886 void IndexPreTransform::reconstruct_n (idx_t i0, idx_t ni, float *recons) const
887 {
888 float *x = chain.empty() ? recons : new float [ni * index->d];
889 ScopeDeleter<float> del (recons == x ? nullptr : x);
890 // initial reconstruction
891 index->reconstruct_n (i0, ni, x);
892
893 // revert transformations from last to first
894 for (int i = chain.size() - 1; i >= 0; i--) {
895 float *x_pre = i == 0 ? recons : new float [chain[i]->d_in * ni];
896 ScopeDeleter<float> del2 (x_pre == recons ? nullptr : x_pre);
897 chain [i]->reverse_transform (ni, x, x_pre);
898 del2.swap (del); // delete [] x;
899 x = x_pre;
900 }
901 }
902
903
904
905 /*********************************************
906 * RemapDimensionsTransform
907 *********************************************/
908
909
910 RemapDimensionsTransform::RemapDimensionsTransform (
911 int d_in, int d_out, const int *map_in):
912 VectorTransform (d_in, d_out)
913 {
914 map.resize (d_out);
915 for (int i = 0; i < d_out; i++) {
916 map[i] = map_in[i];
917 FAISS_THROW_IF_NOT (map[i] == -1 || (map[i] >= 0 && map[i] < d_in));
918 }
919 }
920
921 RemapDimensionsTransform::RemapDimensionsTransform (
922 int d_in, int d_out, bool uniform): VectorTransform (d_in, d_out)
923 {
924 map.resize (d_out, -1);
925
926 if (uniform) {
927 if (d_in < d_out) {
928 for (int i = 0; i < d_in; i++) {
929 map [i * d_out / d_in] = i;
930 }
931 } else {
932 for (int i = 0; i < d_out; i++) {
933 map [i] = i * d_in / d_out;
934 }
935 }
936 } else {
937 for (int i = 0; i < d_in && i < d_out; i++)
938 map [i] = i;
939 }
940 }
941
942
943 void RemapDimensionsTransform::apply_noalloc (idx_t n, const float * x,
944 float *xt) const
945 {
946 for (idx_t i = 0; i < n; i++) {
947 for (int j = 0; j < d_out; j++) {
948 xt[j] = map[j] < 0 ? 0 : x[map[j]];
949 }
950 x += d_in;
951 xt += d_out;
952 }
953 }
954
955 void RemapDimensionsTransform::reverse_transform (idx_t n, const float * xt,
956 float *x) const
957 {
958 memset (x, 0, sizeof (*x) * n * d_in);
959 for (idx_t i = 0; i < n; i++) {
960 for (int j = 0; j < d_out; j++) {
961 if (map[j] >= 0) x[map[j]] = xt[j];
962 }
963 x += d_in;
964 xt += d_out;
965 }
966 }
faiss::LinearTransform::transform_transpose
void transform_transpose(idx_t n, const float *y, float *x) const
Definition: VectorTransform.cpp:134
faiss::IndexPreTransform::index
Index * index
! chain of tranforms
Definition: VectorTransform.h:242
faiss::RandomRotationMatrix
Randomly rotate a set of vectors.
Definition: VectorTransform.h:107
faiss::ClusteringParameters::niter
int niter
clustering iterations
Definition: Clustering.h:25
faiss::OPQMatrix::niter
int niter
Number of outer training iterations.
Definition: VectorTransform.h:183
faiss::ProductQuantizer::decode
void decode(const uint8_t *code, float *x) const
decode a vector from a given code (or n vectors if third argument)
Definition: ProductQuantizer.cpp:338
faiss::fvec_L2sqr
float fvec_L2sqr(const float *x, const float *y, size_t d)
Squared L2 distance between two vectors.
Definition: utils.cpp:481
faiss::RandomRotationMatrix::init
void init(int seed)
must be called before the transform is used
Definition: VectorTransform.cpp:164
faiss::IndexPreTransform::reset
void reset() override
removes all elements from the database.
Definition: VectorTransform.cpp:874
faiss::Index::reset
virtual void reset()=0
removes all elements from the database.
faiss::OPQMatrix::niter_pq
int niter_pq
Number of training iterations for the PQ.
Definition: VectorTransform.h:184
faiss::LinearTransform::A
std::vector< float > A
! whether to use the bias term
Definition: VectorTransform.h:82
faiss::fvecs_maybe_subsample
const float * fvecs_maybe_subsample(size_t d, size_t *n, size_t nmax, const float *x, bool verbose, long seed)
Definition: utils.cpp:1941
faiss::Index::train
virtual void train(idx_t, const float *)
Definition: Index.h:89
faiss::PCAMatrix::eigen_power
float eigen_power
Definition: VectorTransform.h:132
faiss::IDSelector
Definition: AuxIndexStructures.h:52
faiss::LinearTransform::LinearTransform
LinearTransform(int d_in=0, int d_out=0, bool have_bias=false)
both d_in &gt; d_out and d_out &lt; d_in are supported
Definition: VectorTransform.cpp:99
faiss::PCAMatrix
Definition: VectorTransform.h:124
faiss::Index::add_with_ids
virtual void add_with_ids(idx_t n, const float *x, const long *xids)
Definition: Index.cpp:30
faiss::ScopeDeleter
Definition: FaissException.h:39
faiss::PCAMatrix::train
void train(Index::idx_t n, const float *x) override
Definition: VectorTransform.cpp:271
faiss::PCAMatrix::mean
std::vector< float > mean
Mean, size d_in.
Definition: VectorTransform.h:144
faiss::RemapDimensionsTransform::map
std::vector< int > map
Definition: VectorTransform.h:207
faiss::IndexPreTransform::apply_chain
const float * apply_chain(idx_t n, const float *x) const
Definition: VectorTransform.cpp:827
faiss::PCAMatrix::PCAMat
std::vector< float > PCAMat
PCA matrix, size d_in * d_in.
Definition: VectorTransform.h:150
faiss::IndexPreTransform::train
void train(idx_t n, const float *x) override
Definition: VectorTransform.cpp:791
faiss::ProductQuantizer::compute_codes
void compute_codes(const float *x, uint8_t *codes, size_t n) const
same as compute_code for several vectors
Definition: ProductQuantizer.cpp:385
faiss::Index::d
int d
vector dimension
Definition: Index.h:64
faiss::LinearTransform::b
std::vector< float > b
bias vector, size d_out
Definition: VectorTransform.h:85
faiss::Index::reconstruct_n
virtual void reconstruct_n(idx_t i0, idx_t ni, float *recons) const
Definition: Index.cpp:49
faiss::Index::add
virtual void add(idx_t n, const float *x)=0
faiss::LinearTransform
Definition: VectorTransform.h:77
faiss::OPQMatrix::train
void train(Index::idx_t n, const float *x) override
Definition: VectorTransform.cpp:548
faiss::PCAMatrix::balanced_bins
int balanced_bins
try to distribute output eigenvectors in this many bins
Definition: VectorTransform.h:141
faiss::VectorTransform::is_trained
bool is_trained
Definition: VectorTransform.h:42
faiss::Index::idx_t
long idx_t
all indices are this type
Definition: Index.h:62
faiss::IndexPreTransform::reconstruct_n
void reconstruct_n(idx_t i0, idx_t ni, float *recons) const override
Definition: VectorTransform.cpp:886
faiss::Index::ntotal
idx_t ntotal
total nb of indexed vectors
Definition: Index.h:65
faiss::NormalizationTransform::apply_noalloc
void apply_noalloc(idx_t n, const float *x, float *xt) const override
same as apply, but result is pre-allocated
Definition: VectorTransform.cpp:731
faiss::ProductQuantizer::Train_hot_start
the centroids are already initialized
Definition: ProductQuantizer.h:42
faiss::getmillisecs
double getmillisecs()
ms elapsed since some arbitrary epoch
Definition: utils.cpp:70
faiss::Index::remove_ids
virtual long remove_ids(const IDSelector &sel)
Definition: Index.cpp:37
faiss::Index::search
virtual void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const =0
faiss::VectorTransform
Definition: VectorTransform.h:28
faiss::matrix_qr
void matrix_qr(int m, int n, float *a)
Definition: utils.cpp:1289
faiss::IndexPreTransform::own_fields
bool own_fields
! the sub-index
Definition: VectorTransform.h:244
faiss::OPQMatrix::niter_pq_0
int niter_pq_0
same, for the first outer iteration
Definition: VectorTransform.h:185
faiss::OPQMatrix::reverse_transform
void reverse_transform(idx_t n, const float *xt, float *x) const override
Definition: VectorTransform.cpp:709
faiss::ProductQuantizer::cp
ClusteringParameters cp
parameters used during clustering
Definition: ProductQuantizer.h:49
faiss::ivec_checksum
size_t ivec_checksum(size_t n, const int *a)
compute a checksum on a table.
Definition: utils.cpp:1638
faiss::VectorTransform::train
virtual void train(idx_t n, const float *x)
Definition: VectorTransform.cpp:80
faiss::RandomRotationMatrix::reverse_transform
void reverse_transform(idx_t n, const float *xt, float *x) const override
Definition: VectorTransform.cpp:189
faiss::VectorTransform::reverse_transform
virtual void reverse_transform(idx_t n, const float *xt, float *x) const
Definition: VectorTransform.cpp:85
faiss::RemapDimensionsTransform::reverse_transform
void reverse_transform(idx_t n, const float *xt, float *x) const override
reverse transform correct only when the mapping is a permuation
Definition: VectorTransform.cpp:955
faiss::PCAMatrix::reverse_transform
void reverse_transform(idx_t n, const float *xt, float *x) const override
Definition: VectorTransform.cpp:522
faiss::OPQMatrix::max_train_points
size_t max_train_points
if there are too many training points, resample
Definition: VectorTransform.h:188
faiss::PCAMatrix::copy_from
void copy_from(const PCAMatrix &other)
copy pre-trained PCA matrix
Definition: VectorTransform.cpp:413
faiss::VectorTransform::d_out
int d_out
! input dimension
Definition: VectorTransform.h:33
faiss::OPQMatrix::OPQMatrix
OPQMatrix(int d=0, int M=1, int d2=-1)
if d2 != -1, output vectors of this dimension
Definition: VectorTransform.cpp:535
faiss::Index
Definition: Index.h:60
faiss::PCAMatrix::prepare_Ab
void prepare_Ab()
called after mean, PCAMat and eigenvalues are computed
Definition: VectorTransform.cpp:423
faiss::IndexPreTransform::add
void add(idx_t n, const float *x) override
Definition: VectorTransform.cpp:842
faiss::RemapDimensionsTransform::apply_noalloc
void apply_noalloc(idx_t n, const float *x, float *xt) const override
same as apply, but result is pre-allocated
Definition: VectorTransform.cpp:943
faiss::ProductQuantizer
Definition: ProductQuantizer.h:25
faiss::Index::is_trained
bool is_trained
set if the Index does not require training, or if training is done already
Definition: Index.h:69
faiss::PCAMatrix::eigenvalues
std::vector< float > eigenvalues
eigenvalues of covariance matrix (= squared singular values)
Definition: VectorTransform.h:147
faiss::IndexPreTransform::search
void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const override
Definition: VectorTransform.cpp:864
faiss::IndexPreTransform::add_with_ids
void add_with_ids(idx_t n, const float *x, const long *xids) override
Definition: VectorTransform.cpp:851
faiss::PCAMatrix::random_rotation
bool random_rotation
random rotation after PCA
Definition: VectorTransform.h:135
faiss::PCAMatrix::max_points_per_d
size_t max_points_per_d
ratio between # training vectors and dimension
Definition: VectorTransform.h:138
faiss::ClusteringParameters::max_points_per_centroid
int max_points_per_centroid
to limit size of dataset
Definition: Clustering.h:33
faiss::VectorTransform::apply
float * apply(idx_t n, const float *x) const
Definition: VectorTransform.cpp:72
faiss::IndexPreTransform::remove_ids
long remove_ids(const IDSelector &sel) override
Definition: VectorTransform.cpp:879
faiss::VectorTransform::apply_noalloc
virtual void apply_noalloc(idx_t n, const float *x, float *xt) const =0
same as apply, but result is pre-allocated
faiss::OPQMatrix::M
int M
nb of subquantizers
Definition: VectorTransform.h:182
faiss::LinearTransform::apply_noalloc
void apply_noalloc(idx_t n, const float *x, float *xt) const override
same as apply, but result is pre-allocated
Definition: VectorTransform.cpp:105